PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22733_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 247aa    MW: 28823.9 Da    PI: 10.7763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22733_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  ++r G C + ++C+FaHg
  Neem_22733_f_1  7 YKTKLCVLYQR-GRCTR-PTCSFAHG 30
                    9**********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-5435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-9535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044631IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVERKLYKTK LCVLYQRGRC TRPTCSFAHG DAELQRSFRS HIGGRNSGVG DLRDKLDRRH  60
SPRRSYSPGR DARDRQKLRG HSPSRSLEKK SDRKRRKTQH LDGQGEFSRS LKISDGIEDR  120
VKEGKATPSG SKVVLQEQNH VQLKEVQLVI NRLEHQKHQL ESYVEEKVQE ADILSSRIKE  180
LETQLQQEKE ECRRIASKIK KFVKAHNHHS RIQAELMRQV MIFFEPLTSV QHIGQKLDFR  240
SWVISLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447506.11e-101hypothetical protein CICLE_v10015598mg
RefseqXP_006469713.11e-101PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
RefseqXP_006469714.11e-101PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2
TrEMBLA0A067F1651e-101A0A067F165_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4UEP21e-101V4UEP2_9R
STRINGVIT_12s0059g02450.t011e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.18e-42C3H family protein